BioNLP UIMA Component Repository

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The BioNLP Unstructured Information Management Architecture (UIMA) Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.

The following is a list of tools that have been integrated, with links to their websites:

• Analysis Engines:
• Gene Identification: ABGene, ABNER, LingPipe, KeX
• Biomedical Term Recognition: NCBO Annotator Web Service
• Mutation Identification: MutationFinder
• Semantic Parsing: OpenDMAP
• Sentence Detection: KeX LingPipe OpenNLP
• Tokenization: Genia Tagger, LingPipe, Penn BioTokenizer
• Collection Readers for corpora: Bio1 BioIE, Texas, Yapex

The BioNLP-UIMA Component Repository codebase is licensed under the GNU General Public License v2.0. Please note that the 3rd party resources may have different licensing restrictions.